MmuEX0041641 @ mm10
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:95167006-95167680:+
Coord C1 exon
chr3:95167006-95167120
Coord A exon
chr3:95167413-95167476
Coord C2 exon
chr3:95167624-95167680
Length
64 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTACCTACCCTTCAGGGA
3' ss Score
9.93
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGCCTCTCCATCATCCTGGTTCCGGGGCCTGGAGGACGATGCTGTGGCTGCGGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAACCGGACCTTGCTTGTGGCTGCCCG
Seq A exon
GGATCACGTTTTCTCCTTCGATCTTCAAGCCCAAGAAGAAGGGGAGGGGCTGGTGCCCAACAAG
Seq C2 exon
TTTCTGACATGGAGGAGTCAAGATATGGAGAACTGTGCAGTCCGGGGAAAGCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(11.0=35.9)
A:
PF0140314=Sema=FE(16.5=100)
C2:
PF0140314=Sema=PD(35.6=84.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTCCATCATCCTGGTT
R:
TCTTGACTCCTCCATGTCAGA
Band lengths:
137-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types