DreEX0065149 @ danRer10
Exon Skipping
Gene
ENSDARG00000002748 | sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:ZFIN;Acc:ZDB-GENE-040426-1933]
Coordinates
chr19:407607-408978:+
Coord C1 exon
chr19:407607-407721
Coord A exon
chr19:408344-408401
Coord C2 exon
chr19:408922-408978
Length
58 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTCTCCGGTTTAGAGA
3' ss Score
9.23
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ACTCGTACCTGTACCCCAGTTTTCAGGGTCTGGTGTCCAGCAATGAGACGGAGCGTCTGGGTCTGGACTATCAGCGCATGATGAGGATCCAGCACATGCTGTACATCGCCGCCAG
Seq A exon
AGACCATGTGTTTGTTGTAAATCTCACAACGGCAGTAGATGAAATTATTCCACAGCAG
Seq C2 exon
ATCCTGACGTGGAGATCCACAGACGTGTCCAAGTGCACCGTCAGAGGAAGAAACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002748-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(4.0=43.6)
A:
PF0140314=Sema=FE(4.4=100)
C2:
PF0140314=Sema=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAGCAATGAGACGGAG
R:
CTTCCTCTGACGGTGCACTTG
Band lengths:
133-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]