RnoEX0079403 @ rn6
Exon Skipping
Gene
ENSRNOG00000021101 | Sema6c
Description
semaphorin 6C [Source:RGD Symbol;Acc:3659]
Coordinates
chr2:196337391-196338053:+
Coord C1 exon
chr2:196337391-196337505
Coord A exon
chr2:196337797-196337860
Coord C2 exon
chr2:196337997-196338053
Length
64 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTACCTACCCTTCAGGGA
3' ss Score
9.93
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTACCTCTCCGTCATCCTGGTTCCGGGGCCTGGAGGACGATGCTGTGGCTGCGGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAACCGGACCTTGCTTGTGGCTGCCCG
Seq A exon
GGATCACGTTTTCTCCTTCGATCTTCAAGCCCAAGAAGAAGGGGAGGGGCTGGTGCCCAACAAG
Seq C2 exon
TTTCTGACATGGCGGAGCCAAGACATGGAGAATTGTGCTGTCCGGGGAAAGCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021101_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(11.1=35.9)
A:
PF0140314=Sema=FE(16.7=100)
C2:
PF0140314=Sema=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTCCGTCATCCTGGTTC
R:
ATTCTCCATGTCTTGGCTCCG
Band lengths:
146-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]