GgaEX1051712 @ galGal4
Exon Skipping
Gene
ENSGALG00000027651 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr25:1782726-1783390:-
Coord C1 exon
chr25:1783276-1783390
Coord A exon
chr25:1782987-1783044
Coord C2 exon
chr25:1782726-1782782
Length
58 bp
Sequences
Splice sites
3' ss Seq
CCCCCCGCTGTGCCCCACAGGGA
3' ss Score
9.98
5' ss Seq
CGGGTAATG
5' ss Score
6.86
Exon sequences
Seq C1 exon
CCACCGCCTCCTATCCGCGCTTCGGGGGTCTCCGCGGGGACAACGGCAGCGCGGAGTTCGGCATCGGCTTCCAGCGAATGCTGCGCCTCAACGGGACGCTGCTGGTGGCCGCGCG
Seq A exon
GGACCACCTCTACGCCTTCGCTCTGGGGGGGGACCCGACAGCGCTGTACCCCCATCGG
Seq C2 exon
AGCGTCACCTGGGAACCACGGGACAGAGCCGGCTGTGCTGTGCGGGGAGAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027651-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.053
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(3.6=38.5)
A:
PF0140314=Sema=FE(4.6=100)
C2:
PF0140314=Sema=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTATCCGCGCTTC
R:
CTCTGTCCCGTGGTTCCCAG
Band lengths:
138-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]