DreEX6041425 @ danRer10
Exon Skipping
Gene
ENSDARG00000000189 | sema6e
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
Coordinates
chr16:30263676-30269069:+
Coord C1 exon
chr16:30263676-30263790
Coord A exon
chr16:30265621-30265678
Coord C2 exon
chr16:30269013-30269069
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTCTGTCTCTGTAGAGA
3' ss Score
11.1
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACACCTACCTGTACCCCAGTTTCCAGGGGAACATGTCAGATAACGACACCGCCAGACTGGGCCTGGATTTTCAGAGGATGCTGCGGATTAACCACATGGTCTACATCGCTGCAAG
Seq A exon
AGATCACGTTTTTGCCATTAACCTCAGTGCTTCATTGGAGCGCATCGTCCCCCAACAG
Seq C2 exon
AAACTGACATGGAAGACAAAAGATGTGGAGAAATGCACAGTCAGGGGGAAAAACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000189-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(3.6=38.5)
A:
PF0140314=Sema=FE(4.5=100)
C2:
PF0140314=Sema=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAACGACACCGCCAGACTG
R:
TGTTTTTCCCCCTGACTGTGC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]