GgaEX0006656 @ galGal3
Exon Skipping
Gene
ENSGALG00000004844 | SEMA6D
Description
NA
Coordinates
chr10:11367838-11368653:+
Coord C1 exon
chr10:11367838-11367939
Coord A exon
chr10:11368160-11368250
Coord C2 exon
chr10:11368534-11368653
Length
91 bp
Sequences
Splice sites
3' ss Seq
CATTTATTTTTCTTCTCTAGCTG
3' ss Score
10.08
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGAATGCCATAACTTCATTAAAGTCTTTGTTCCAAGAAATGACGAGATGGTGTTTGTCTGTGGAACAAATGCATTTAATCCTATGTGCAGATACTATCGG
Seq A exon
CTGAGTACGTTAGAGTATGATGGGGAGGAAATTAGTGGTTTGGCAAGATGCCCATTTGATGCCAGACAAACCAATGTCGCCCTCTTTGCTG
Seq C2 exon
ATGGAAAATTGTATTCAGCAACAGTAGCAGATTTCCTGGCAAGTGATGCTGTTATTTATCGCAGCATGGGAGATGGATCTGCCCTAAGAACAATAAAGTATGATTCCAAATGGATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004844_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.7=100)
A:
PF0140314=Sema=FE(7.0=100)
C2:
PF0140314=Sema=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTTGTTCCAAGAAATGACGAGA
R:
CTTAGGGCAGATCCATCTCCCA
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]