Special

ENSMUSG00000027200 @ mm10

Biotype
protein_coding
Gene Symbol
Sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:124089969-124667770:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
89.15
43.15
0
Alternative 3'ss
39
chr2:124660244-124660282
+
10.85
43.15
0
Alternative 5'ss
0
NA
+
41.38
34.86
0
Alternative 5'ss
12
chr2:124662360-124662371
+
58.62
34.86
0
Exon Skipping
57
chr2:124660705-124660761
+
31.09
52.39
0
Exon Skipping
168
chr2:124662204-124662371
+
58.26
88.07
0
Exon Skipping
75
chr2:124451139-124451213
+
4.7
13.42
0
Exon Skipping
102
chr2:124148302-124148403
+
7.2
73.58
0
Intron Retention
163568
chr2:124490013-124653580
+
7.73
30.77
0
Intron Retention
3676
chr2:124660345-124664020
+
30.77
66.51
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000137872 SEMA6D 1-to-1
Human hg19 ENSG00000137872 SEMA6D 1-to-1
Rat rn6 ENSRNOG00000004812 Sema6d 1-to-1
Cow bosTau6 ENSBTAG00000016800 SEMA6D 1-to-1
Chicken galGal4 ENSGALG00000004844 SEMA6D 1-to-1
Chicken galGal3 ENSGALG00000004844 SEMA6D 1-to-1
Zebrafish danRer10 ENSDARG00000011533 sema6dl 1-to-1
Fruitfly dm6 FBgn0011259 Sema-1a 4-to-2
Fruitfly dm6 FBgn0016059 Sema-1b 4-to-2