MmuEX1023277 @ mm10
Exon Skipping
Gene
ENSMUSG00000027200 | Sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:124142934-124298655:+
Coord C1 exon
chr2:124142934-124143055
Coord A exon
chr2:124148302-124148403
Coord C2 exon
chr2:124298575-124298655
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTTGCACTTTTGATTACAGAAA
3' ss Score
6.29
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTGTTGAAAGAAGCAAAGACCATCAGGAGTAAAAAAGAAACTTGAAAACCAGAGTCCATCCAAAGATATCAACAAAGGAAACTCCTAGAATCAAAGGAGAGAAAGGCGGTGTGCAGCTGGAG
Seq A exon
AAAGATTAGAGTCCATTGTGAAAGCAAGTGGCCGGAATCATTATGAAACGAGAAATGAGTGAGAAGCAGAGAGATCACATCGTTAGAGTGAATAGAGACTGG
Seq C2 exon
GAACTCCAACCTGAGCAGATGCCAGTTGACATGGGAACTCTGAGGCCAGCAATTTAAGGATTTTCACGTTTGCTTGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027200_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTGAAAGAAGCAAAGACCA
R:
ACTGCAAGCAAACGTGAAAATCC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types