MmuALTA1043710-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000086954 | 4930583P06Rik
Description
RIKEN cDNA 4930583P06 gene [Source:MGI Symbol;Acc:MGI:1923196]
Coordinates
chr2:124217726-124219538:-
Coord C1 exon
chr2:124219468-124219538
Coord A exon
chr2:124217827-124218014
Coord C2 exon
chr2:124217726-124217826
Length
188 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
GCTTTTTCCATTTTACCTAGATA
3' ss Score
7.11
Exon sequences
Seq C1 exon
TTACTGCATCCAATCACTGAGATGACTGAATTATGAAGGGGCAAATCTTATCAGTCAGTTAATCCACCAAG
Seq A exon
ATACCTCCTTTCCTGACTTCAGTCAGGGATATAAATGGGGTATCTTTATCAAAACCCTACCCTCAAATCTCAGGGATCTACGAGAATAAGAGCTAGAAATATTCTAAGACCCAGAAGAGATAGATAACATCAGACAAACCACATCTACCGGACAACAAGAACTGATCGATCCATCTATGAACTCCTAG
Seq C2 exon
AGACTGTGGAAGCACTCACAAGACCTGAACAAGTCCAACCAGACAAAAGCCCAGCACTGAGAAGGTGGAGTAGACACAAAGTTCCAGCTCTAATCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086954-1-3,1-2,1-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCATCCAATCACTGAGATGAC
R:
CTTCTTGATTAGAGCTGGAACTTTGT
Band lengths:
170-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types