MmuALTA1043710-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000086954 | 4930583P06Rik
Description
RIKEN cDNA 4930583P06 gene [Source:MGI Symbol;Acc:MGI:1923196]
Coordinates
chr2:124217726-124219538:-
Coord C1 exon
chr2:124219468-124219538
Coord A exon
chr2:124217827-124217941
Coord C2 exon
chr2:124217726-124217826
Length
115 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
ACCCTACCCTCAAATCTCAGGGA
3' ss Score
7.25
Exon sequences
Seq C1 exon
TTACTGCATCCAATCACTGAGATGACTGAATTATGAAGGGGCAAATCTTATCAGTCAGTTAATCCACCAAG
Seq A exon
GGATCTACGAGAATAAGAGCTAGAAATATTCTAAGACCCAGAAGAGATAGATAACATCAGACAAACCACATCTACCGGACAACAAGAACTGATCGATCCATCTATGAACTCCTAG
Seq C2 exon
AGACTGTGGAAGCACTCACAAGACCTGAACAAGTCCAACCAGACAAAAGCCCAGCACTGAGAAGGTGGAGTAGACACAAAGTTCCAGCTCTAATCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086954-1-3,1-2,1-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCATCCAATCACTGAGATGAC
R:
CTTCTTGATTAGAGCTGGAACTTTGT
Band lengths:
170-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types