MmuEX0041646 @ mm10
Exon Skipping
Gene
ENSMUSG00000027200 | Sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:124660283-124662359:+
Coord C1 exon
chr2:124660283-124660344
Coord A exon
chr2:124660705-124660761
Coord C2 exon
chr2:124662204-124662359
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTTTAATCCCTTTAGAAA
3' ss Score
8.23
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
CCCTGGAGGATATGAGCAGGACACGGAGTACGGCAACACAGCCCACCTAGGGGACTGCCACG
Seq A exon
AAAGTTTGCCTCCTTCAACTACACCAGATTACAAAATATTTGGCGGTCCAACATCTG
Seq C2 exon
ACATGGAGGTATCCTCATCTTCTGTTACCACTGTGGCAAGTAGCCCAGAAATTACATCTAAAGTGATTGATACCTGGAGACCTAAACTGACGAGCTCCCGGAAATTTGTAGTTCAAGATGACCCAAATACTTCTGATTTTACTGATACTATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027200_MULTIEX1-2/4=1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.150 C2=0.067
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(31.3=100)
A:
PF0143720=PSI=PD(12.3=40.0)
C2:
PF0143720=PSI=PD(14.9=17.5)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACACAGCCCACCTAGG
R:
ACAAATTTCCGGGAGCTCGTC
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types