HsaEX0057169 @ hg38
Exon Skipping
Gene
ENSG00000137872 | SEMA6D
Description
semaphorin 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr15:47766577-47768748:+
Coord C1 exon
chr15:47766577-47766677
Coord A exon
chr15:47767037-47767093
Coord C2 exon
chr15:47768581-47768748
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTTTAATTCTTTTAGAAA
3' ss Score
8.3
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GCTGTTAACCGAAGACTTCTTTGCTTTCCATAACCACAGTGCTGAAGGATATGAACAAGACACAGAATTCGGCAACACAGCTCATCTAGGGGACTGCCATG
Seq A exon
AAATTTTGCCTACTTCAACTACACCAGATTACAAAATATTTGGCGGTCCAACATCTG
Seq C2 exon
ACATGGAGGTATCTTCATCTTCTGTTACCACAATGGCAAGTATCCCAGAAATCACACCTAAAGTGATTGATACCTGGAGACCTAAACTGACAAGCTCTCGGAAATTTGTAGTTCAAGATGATCCAAACACTTCTGATTTTACTGATCCTTTATCGGGTATCCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137872-'54-62,'54-61,55-62
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.065 C2=0.101
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(44.7=100)
A:
PF0143720=PSI=PD(5.0=15.0)
C2:
PF0143720=PSI=PD(13.6=75.0)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAACACAGCTCATCTAGG
R:
CCGAGAGCTTGTCAGTTTAGGT
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development