BtaEX0031907 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016800 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:62863669-62871248:-
Coord C1 exon
chr10:62871187-62871248
Coord A exon
chr10:62870770-62870826
Coord C2 exon
chr10:62863669-62867391
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTTTAATTCTTTTAGAAA
3' ss Score
8.3
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
CGCTGGAGGATTTGAACAAGACACAGAATATGGCAACACGGCCCATCTAGGGGACTGCCACG
Seq A exon
AAATTTTGCCTACTTCAACTACACCAGATTACAAAATATTTGGCGGTCCAACATCTG
Seq C2 exon
GTGTACGGTGGGAAGTCCAGTCTGGAGAGGCCAACCAGATGGTCCACATGAATGTCCTCATCACCTGTGTCTTTGCAGCTTTTGTCTTGGGTGCGTTCATTGCAGGTGTGGCAGTCTACTGTTACCGTGACATGTTTGTTCGGAAAAACAGAAAGATCCATAAAGATGCAGAATCTGCCCAGTCATGCACAGACTCCAGTGGAAGTTTTGCCAAGCTGAATGGTCTCTTTGACAGCCCCGTCAAGGAATACCAACAGAATATTGATTCTCCCAAATTATATAGTAACCTGCTGACCAGTCGGAAAGAGCTGCCACCCAATGGAGATACAAAATCCATGGTCATGGACCATCGAGGCCAACCTCCTGAGTTGGCTGCTCTCCCCACTCCTGAGTCTACGCCTGTGCTTCACCAGAAGACCCTGCAGGCCATGAAGAGCCACTCAGAAAAGGCCCATGGCCATGGAGCTTCAAGGAAAGAAACCCCCCAGTTTTTTCCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016800_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.793
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(33.9=100)
A:
PF0143720=PSI=PD(8.1=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTAGGGGACTGCCACG
R:
GTAGACTGCCACACCTGCAAT
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development