DreEX0065160 @ danRer10
Exon Skipping
Gene
ENSDARG00000011533 | sema6dl
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like [Source:ZFIN;Acc:ZDB-GENE-050417-171]
Coordinates
chr18:40390889-40394121:+
Coord C1 exon
chr18:40390889-40390947
Coord A exon
chr18:40391272-40391328
Coord C2 exon
chr18:40392833-40394121
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTTTAATTCTTTTAGAAT
3' ss Score
8.88
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
AAGTGGTTATGAGCAAGATGTTGAATATGGCAACACTGCTCACCTCGGGGATTGTCACG
Seq A exon
AATTTTTGGCCACTACATCAGCGCCAGATTTCAAATCATATGGCGACCCAACCTCTG
Seq C2 exon
GTGTTTGGGAAATACAAGCAGGTGAATCAAACCAGATGGTGCACATGAACATCCTGATCTCCTGTGTGTTAGCTGCGTTTCTGCTTGGTGCATTCATCGCAGGCATGGTTGTTTACTGCTATAGAGATGCGTTTCTTCGCACTCCACGAAAGATCCAAAAAGATGCAGAGTCGGCACAATCCTGCACTGATTCCACTGGCAGCTTTGCCAAGCTTAACGGTCTGTTTGACAGTCCTGTCAAAGAGTACCAGCCTAATTTGGATACTCCCAAACTCTACACCAACCTGTTGAGCAATGGAAGGGAGGTGCCAACCACTGGAGAAACTAAGACTATGCTCCTGAGTGGGCAGCCACCGGAATTAGCAGCACTGCCTACGCCTGAATCCACACCTGTGCTGCAACAGAAGAGCCTCCAGCCCATTAAGAACCAGTGGGAGAGAGCTCATGGAAAGATGAGTGGCTCCCGCAAAGATGCACCACCCAAAAGCCCACAGTACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011533_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.083 C2=0.801
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(28.6=100)
A:
PF0143720=PSI=PD(1.8=5.0)
C2:
PF0143720=PSI=PD(20.0=3.3)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCTCGGGGATTGTCACG
R:
ACAACCATGCCTGCGATGAAT
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]