GgaEX0006654 @ galGal4
Exon Skipping
Gene
ENSGALG00000004844 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:9411203-9413660:+
Coord C1 exon
chr10:9411203-9411264
Coord A exon
chr10:9411613-9411669
Coord C2 exon
chr10:9413493-9413660
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTTTAATTCTTTTAGAAA
3' ss Score
8.3
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
CACTGGAGGATATGTACAAGATGTAGAATATGGCAACACAGCGCAGCTTGGGGACTGCCACG
Seq A exon
AAATTTTGCCTACTACAGCTACACCAGATTACAAAATATTTGGCGACCCAACATCTG
Seq C2 exon
ACATGAAGTTCTCCTCAGCTTCCATTACCACAATGGCAAGTATCCCAGTTATATCACCTAGAGTGATTGGTTCCTGGAAACCTAAAGTGACTGGCTCTCGGAAATTTGTAGTTCAAGATGACCCAAACACTTCTGATTATTCTGATCCATTATCAGGTGTCCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004844-'17-28,'17-23,18-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(35.0=100)
A:
PF0143720=PSI=PD(5.0=15.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTGGGGACTGCCAC
R:
AACTACAAATTTCCGAGAGCCAGT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]