RnoEX0079412 @ rn6
Exon Skipping
Gene
ENSRNOG00000004812 | Sema6d
Description
semaphorin 6D [Source:RGD Symbol;Acc:1310910]
Coordinates
chr3:116950508-116952627:+
Coord C1 exon
chr3:116950508-116950608
Coord A exon
chr3:116950971-116951027
Coord C2 exon
chr3:116952472-116952627
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTTTGATCCCTTTAGAAA
3' ss Score
8.27
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GCTGTTAACCGAAGACTTCTTTGCTTTCCATAACCACAGTGCTGGAGGATATGAGCAGGACACCGAGTATGGCAACACGGCCCACCTAGGGGACTGCCACG
Seq A exon
AAAGTTTGCCTACTTCAACTACACCAGATTACAAAATATTTGGCGGTCCAACATCTG
Seq C2 exon
ACATGGAGGTACCCTCATCTTCTGTTACCACTGTGGCAAGTAGCCCAGAAATTACATCTAAAGTGATTGATACCTGGAGACCTAAACTGACGAGCTCCCGGAAATTTGTAGTTCAAGATGACCCAAACACTTCCGATTTTACTGATACTATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004812_MULTIEX1-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.100 C2=0.067
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(44.7=100)
A:
PF0143720=PSI=PD(13.6=45.0)
C2:
PF0143720=PSI=PD(9.1=12.3)
Main Skipping Isoform:
ENSRNOT00000066101fB13125
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACACCGAGTATGGCAAC
R:
TCCGGGAGCTCGTCAGTTTAG
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]