RnoEX0079413 @ rn6
Exon Skipping
Gene
ENSRNOG00000004812 | Sema6d
Description
semaphorin 6D [Source:RGD Symbol;Acc:1310910]
Coordinates
chr3:116950508-116958050:+
Coord C1 exon
chr3:116950508-116950608
Coord A exon
chr3:116952472-116952639
Coord C2 exon
chr3:116954351-116958050
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACATCTGTTTGCCACCACAGACA
3' ss Score
7.06
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTGTTAACCGAAGACTTCTTTGCTTTCCATAACCACAGTGCTGGAGGATATGAGCAGGACACCGAGTATGGCAACACGGCCCACCTAGGGGACTGCCACG
Seq A exon
ACATGGAGGTACCCTCATCTTCTGTTACCACTGTGGCAAGTAGCCCAGAAATTACATCTAAAGTGATTGATACCTGGAGACCTAAACTGACGAGCTCCCGGAAATTTGTAGTTCAAGATGACCCAAACACTTCCGATTTTACTGATACTATATCAGGTATCCCAAAGG
Seq C2 exon
GTGTACGGTGGGAAGTCCAGTCTGGAGATTCCAACCAGATGGTCCACATGAATGTCCTCATCACCTGCGTGTTTGCAGCTTTTGTCTTGGGCGCGTTCATCGCAGGAGTGGCTGTGTACTGCTATCGTGACATGTTTGTTCGGAAGAACAGAAAGATCCATAAAGATGCAGAATCGGCCCAGTCATGCACAGATTCCAGTGGAAGCTTTGCCAAGCTGAATGGTCTCTTTGACAGCCCCGTCAAGGAGTACCAGCAGAACATCGATTCACCCAAACTGTACAGCAACCTGCTGACCAGTCGGAAGGAGCTGCCTCCCAACACGGATCCAAAGTCCATGGCCATGGACCATCGAGGCCAGCCTCCAGAGCTGGCTGCTCTCCCCACGCCAGAGTCTACACCTGTACTCCACCAGAAGACCCTGCAGGCCATGAAGAGCCACTCCGATAAGGCCCATGGCCATGGTGCTTCAAGGAAGGAACACCCCCAGTTTTTTCCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004812_MULTIEX1-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.040 C2=0.788
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(44.7=100)
A:
NO
C2:
PF0143720=PSI=PD(7.9=1.4)
Main Inclusion Isoform:
ENSRNOT00000066101fB13125
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACACCGAGTATGGCAAC
R:
GCTTCCACTGGAATCTGTGCA
Band lengths:
252-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]