GgaEX0006655 @ galGal3
Exon Skipping
Gene
ENSGALG00000004844 | SEMA6D
Description
NA
Coordinates
chr10:11372753-11388576:+
Coord C1 exon
chr10:11372753-11372856
Coord A exon
chr10:11375086-11375253
Coord C2 exon
chr10:11378485-11388576
Length
168 bp
Sequences
Splice sites
3' ss Seq
AAATCTGTTTGCCACCACAGACA
3' ss Score
5.36
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TGTTAATTGCAGGTTCTCTTTGTTTGTTTCATACAACCACAGCACTGGAGGATATGTACAAGATGTAGAATATGGCAACACAGCGCAGCTTGGGGACTGCCACG
Seq A exon
ACATGAAGTTCTCCTCAGCTTCCATTACCACAATGGCAAGTATCCCAGTTATATCACCTAGAGTGATTGGTTCCTGGAAACCTAAAGTGACTGGCTCTCGGAAATTTGTAGTTCAAGATGACCCAAACACTTCTGATTATTCTGATCCATTATCAGGTGTCCCAAAGG
Seq C2 exon
GTGTAAGGTGGGAAGTGCAATCAGGAGAGTCCAACCAAATGGTACACATGAATGTCCTAATCACTTGTGTCTTTGCTGCTTTTGTCCTGGGAGCCTTTATTGCGGGAGTGGCTGTGTACTGTTATCGAGATGTGTTTGTACGGAAATCCAGGAAAATACACAAGGATGCAGAATCTGCTCAGTCCTGTACAGACTCCAGTGGGAGCTTTGCTAAACTGAATGGGCTTTTTGATAGTCCCGTCAAGGAATATCAACAAAACATCGATTCGCCCAAACTCTACACCAACCTGTTGACTAGCAGAAAGGAACTGCCACCAAATGGCGATATGAAGTCCATGATGATGGACCACAGAGGCCAGCCTCCGGAATTAGCTGCACTTCCGACTCCTGAATCCACACCGGTTCTTCAGCAAAAGACTCTGCAAGCCATGAAAAGTCAGTCGGACAAAGCACACGGTAACCTCAATGCTTCGCGAAAGGAAACCCCGCTAAAGAGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004844_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.105 C2=0.793
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(37.7=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACAACCACAGCACTGGAGGA
R:
TGCATCCTTGTGTATTTTCCTGGA
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]