GgaEX0006654 @ galGal3
Exon Skipping
Gene
ENSGALG00000004844 | SEMA6D
Description
NA
Coordinates
chr10:11372753-11375253:+
Coord C1 exon
chr10:11372753-11372856
Coord A exon
chr10:11373205-11373261
Coord C2 exon
chr10:11375086-11375253
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTTTAATTCTTTTAGAAA
3' ss Score
8.3
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
TGTTAATTGCAGGTTCTCTTTGTTTGTTTCATACAACCACAGCACTGGAGGATATGTACAAGATGTAGAATATGGCAACACAGCGCAGCTTGGGGACTGCCACG
Seq A exon
AAATTTTGCCTACTACAGCTACACCAGATTACAAAATATTTGGCGACCCAACATCTG
Seq C2 exon
ACATGAAGTTCTCCTCAGCTTCCATTACCACAATGGCAAGTATCCCAGTTATATCACCTAGAGTGATTGGTTCCTGGAAACCTAAAGTGACTGGCTCTCGGAAATTTGTAGTTCAAGATGACCCAAACACTTCTGATTATTCTGATCCATTATCAGGTGTCCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004844_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(37.7=100)
A:
PF0143720=PSI=PD(3.3=10.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAGCACTGGAGGATATGT
R:
TCCAGGAACCAATCACTCTAGGT
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]