BtaEX0031908 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016800 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:62863669-62871248:-
Coord C1 exon
chr10:62871187-62871248
Coord A exon
chr10:62869126-62869293
Coord C2 exon
chr10:62863669-62867391
Length
168 bp
Sequences
Splice sites
3' ss Seq
AAATCTGTTTGCCACCACAGACA
3' ss Score
5.36
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CGCTGGAGGATTTGAACAAGACACAGAATATGGCAACACGGCCCATCTAGGGGACTGCCACG
Seq A exon
ACATGGAGGTATCTTCATCTTCTGTTACCACAATGGCAAGTATCCCAGAAATTACACCTAAAGTGATTGATACCTGGAGACCTAAACTGACCAGCTCCCGGAAATTTGTAGTTCAAGATGACCCAAACACTTCTGATTTTACTGATCCTTTATCAGGTATCCCAAAGG
Seq C2 exon
GTGTACGGTGGGAAGTCCAGTCTGGAGAGGCCAACCAGATGGTCCACATGAATGTCCTCATCACCTGTGTCTTTGCAGCTTTTGTCTTGGGTGCGTTCATTGCAGGTGTGGCAGTCTACTGTTACCGTGACATGTTTGTTCGGAAAAACAGAAAGATCCATAAAGATGCAGAATCTGCCCAGTCATGCACAGACTCCAGTGGAAGTTTTGCCAAGCTGAATGGTCTCTTTGACAGCCCCGTCAAGGAATACCAACAGAATATTGATTCTCCCAAATTATATAGTAACCTGCTGACCAGTCGGAAAGAGCTGCCACCCAATGGAGATACAAAATCCATGGTCATGGACCATCGAGGCCAACCTCCTGAGTTGGCTGCTCTCCCCACTCCTGAGTCTACGCCTGTGCTTCACCAGAAGACCCTGCAGGCCATGAAGAGCCACTCAGAAAAGGCCCATGGCCATGGAGCTTCAAGGAAAGAAACCCCCCAGTTTTTTCCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016800_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.298 C2=0.793
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(33.9=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGAGGATTTGAACAAGAC
R:
CTGTGCATGACTGGGCAGATT
Band lengths:
254-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development