MmuEX6104543 @ mm10
Exon Skipping
Gene
ENSMUSG00000027200 | Sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:124655153-124656129:+
Coord C1 exon
chr2:124655153-124655254
Coord A exon
chr2:124655486-124655576
Coord C2 exon
chr2:124656010-124656129
Length
91 bp
Sequences
Splice sites
3' ss Seq
CGATTTTTTTTCTCTTGTAGTTG
3' ss Score
9.34
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGAATGCCACAACTTCATCAAAGTCTTTGTCCCAAGAAATGATGAGATGGTTTTTGTCTGTGGTACCAATGCTTTCAACCCGATGTGCAGATACTATAGG
Seq A exon
TTGAGAACGTTAGAGTATGATGGGGAAGAAATTAGTGGCCTGGCACGATGCCCGTTTGATGCCCGACAAACCAATGTCGCCCTCTTTGCTG
Seq C2 exon
ATGGAAAACTCTATTCTGCCACAGTGGCTGATTTCCTGGCCAGTGATGCTGTCATTTACAGAAGCATGGGAGATGGATCTGCCCTTCGCACAATAAAATACGATTCCAAGTGGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027200-'37-37,'37-36,38-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.8=100)
A:
PF0140314=Sema=FE(7.1=100)
C2:
PF0140314=Sema=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCATCAAAGTCTTTGTCCCA
R:
AAGGGCAGATCCATCTCCCAT
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types