RnoEX0079407 @ rn6
Exon Skipping
Gene
ENSRNOG00000004812 | Sema6d
Description
semaphorin 6D [Source:RGD Symbol;Acc:1310910]
Coordinates
chr3:116945147-116946144:+
Coord C1 exon
chr3:116945147-116945248
Coord A exon
chr3:116945483-116945573
Coord C2 exon
chr3:116946025-116946144
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTCCTCTTGCAGTTG
3' ss Score
11.52
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GATGAATGTCACAACTTCATCAAAGTCTTTGTCCCAAGAAATGATGAGATGGTTTTTGTCTGTGGCACCAACGCTTTCAACCCGATGTGCAGATACTATAGG
Seq A exon
TTGAGTACCTTAGAGTATGATGGGGAAGAAATTAGTGGCCTGGCACGGTGCCCGTTTGATGCCCGACAAACCAATGTTGCCCTCTTTGCTG
Seq C2 exon
ATGGGAAACTGTATTCTGCCACAGTGGCTGATTTCCTGGCCAGTGATGCTGTCATTTACAGAAGCATGGGTGATGGATCGGCCCTCCGCACAATAAAATACGACTCCAAATGGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004812-'20-14,'20-13,21-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.2=100)
A:
PF0140314=Sema=FE(7.4=100)
C2:
PF0140314=Sema=FE(9.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCATCAAAGTCTTTGTCCCA
R:
CCGATCCATCACCCATGCTTC
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]