DreEX0065158 @ danRer10
Exon Skipping
Gene
ENSDARG00000011533 | sema6dl
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like [Source:ZFIN;Acc:ZDB-GENE-050417-171]
Coordinates
chr18:40383123-40385034:+
Coord C1 exon
chr18:40383123-40383224
Coord A exon
chr18:40383362-40383452
Coord C2 exon
chr18:40384915-40385034
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTTCCGGCTTTCTTTTTTAGTTG
3' ss Score
10.6
5' ss Seq
CCGGTATGA
5' ss Score
8.14
Exon sequences
Seq C1 exon
GACGAGTGCCATAATTTCATTAAAGTCCTGGTTCCGAGAAATGATGATCTCGTGTTCATCTGCGGAACAAATGGTTTCAATCCCATGTGCCGTTACTACAGG
Seq A exon
TTGGATAACCTGGAATTTGATGGGGAAGAGATCAGCGGTTTGGCCCGATGCCCGTTTGACGCTAAGCAGACAAACGTTGCCCTGTTTGCCG
Seq C2 exon
ATGGTAAGCTGTACTCTGCTACGGTGGCAGACTTCCTGGCTAGCGATGCTGTGATTTATCGCAGTATGGGAGATGGTTCTGCCCTTCGCACTATCAAGTATGACTCCAAGTGGTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011533-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(24.3=100)
A:
PF0140314=Sema=FE(7.0=100)
C2:
PF0140314=Sema=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTCCTGGTTCCGAGAAATGA
R:
AAGGGCAGAACCATCTCCCAT
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]