BtaEX6053990 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016800 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:62875490-62876927:-
Coord C1 exon
chr10:62876826-62876927
Coord A exon
chr10:62876502-62876592
Coord C2 exon
chr10:62875490-62875609
Length
91 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTTTCTTTTGTAGTTG
3' ss Score
8.98
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGAATGCCACAACTTTATTAAAGTATTTGTTCCAAGAAACGATGAGATGGTTTTTGTTTGTGGCACCAATGCGTTTAATCCCATGTGTAGATACTATAAG
Seq A exon
TTGAATACCTTAGAGTATGATGGAGAAGAAATTAGTGGCCTGGCAAGATGCCCATTTGATGCCAGACAAACTAATGTTGCCCTTTTTGCTG
Seq C2 exon
ATGGGAAGCTGTATTCTGCCACAGTGGCTGACTTCTTGGCCAGTGATGCTGTTATTTATCGAAGCATGGGTGATGGATCTGCTCTTCGTACAATAAAATATGATTCCAAATGGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016800-'12-7,'12-6,13-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.8=100)
A:
PF0140314=Sema=FE(7.1=100)
C2:
PF0140314=Sema=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCCAAGAAACGATGAGATGGT
R:
TTGTACGAAGAGCAGATCCATCAC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]