HsaEX0057163 @ hg19
Exon Skipping
Gene
ENSG00000143434 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:10740]
Coordinates
chr1:151116861-151118933:-
Coord C1 exon
chr1:151118909-151118933
Coord A exon
chr1:151117500-151117760
Coord C2 exon
chr1:151116861-151116910
Length
261 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCATCCCTTCCACAGCTC
3' ss Score
10.49
5' ss Seq
AAGGTGTAT
5' ss Score
2.71
Exon sequences
Seq C1 exon
CGATCCCGCTGACCCGAATCCTGGA
Seq A exon
CTCTCCTAGACTCTGGCTGTGACCCCAGCCATTCCCCAGAGGTGGCTTCGGGGCCAGGAGAGAGAAGGGCTGTTTCCTCTTCCCAGCAACGGGAGGATCTGGAAAGGGGAGAGTCGGCCAGGTCTCTCCCATGTGCTTCAGATGGGGTGTGTGAAGCAGCTCGGATTCTTCCAGGGCAGAGTGATCTTTTCTCCAGGCCAGGAGTTGAGGAGCTGACCAGATGCTGCTTCCCAGAAACAGCTACAAGAAGCCCTCTTAAAG
Seq C2 exon
GTCAGAGGTTTCCTATCCCCCTCAAGCCCCCACAGGAGTCACCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143434_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)