HsaEX0057163 @ hg38
Exon Skipping
Gene
ENSG00000143434 | SEMA6C
Description
semaphorin 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr1:151144385-151146628:-
Coord C1 exon
chr1:151146433-151146628
Coord A exon
chr1:151145024-151145284
Coord C2 exon
chr1:151144385-151144434
Length
261 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCATCCCTTCCACAGCTC
3' ss Score
10.49
5' ss Seq
AAGGTGTAT
5' ss Score
2.71
Exon sequences
Seq C1 exon
GTTTTCCTCCGCGGATCCGCGGCTGGACTTGGACCCAGGGCTCTCCCGACAGCGCCCTGGAACCCAAATTCAAGCACCATCCAATTCGGACGCTCATCGCATCTCGCCTGAGCACAACCACGGATTGCGAACTCAGCGCAGCGCGTGGCCGCTGGCCGCCCGCGGCGATCTCGATCCCGCTGACCCGAATCCTGGA
Seq A exon
CTCTCCTAGACTCTGGCTGTGACCCCAGCCATTCCCCAGAGGTGGCTTCGGGGCCAGGAGAGAGAAGGGCTGTTTCCTCTTCCCAGCAACGGGAGGATCTGGAAAGGGGAGAGTCGGCCAGGTCTCTCCCATGTGCTTCAGATGGGGTGTGTGAAGCAGCTCGGATTCTTCCAGGGCAGAGTGATCTTTTCTCCAGGCCAGGAGTTGAGGAGCTGACCAGATGCTGCTTCCCAGAAACAGCTACAAGAAGCCCTCTTAAAG
Seq C2 exon
GTCAGAGGTTTCCTATCCCCCTCAAGCCCCCACAGGAGTCACCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143434_MULTIEX2-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCCTCCGCGGATCCG
R:
CTGGGTTGGTGACTCCTGTGG
Band lengths:
246-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development