MmuEX6072502 @ mm9
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:94973086-94974062:+
Coord C1 exon
chr3:94973086-94973303
Coord A exon
chr3:94973504-94973635
Coord C2 exon
chr3:94973910-94974062
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTCTGGCTCCCTCAGCAT
3' ss Score
7.27
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGCAGTTTTCCAGGGTAGCCCGGGTATGTAAACGTGACATGGGTGGCTCACCTCGGGCCTTGGATCGCCACTGGACATCCTTCCTTAAGCTGAGGCTCAACTGCTCTGTCCCTGGGGACTCTACCTTCTACTTTGACGTCTTACAGTCCTTAACTGGGCCTGTGAACCTGCATGGCCGCTCCGCTCTCTTTGGGGTCTTCACTACTCAGACCAATAG
Seq A exon
CATTCCTGGGTCTGCAGTCTGCGCCTTCTACCTAGATGATATTGAACGTGGCTTTGAGGGCAAGTTCAAGGAGCAGAGGAGTCTGGATGGGGCCTGGACTCCTGTGTCTGAGGACAAGGTCCCCTCACCCAG
Seq C2 exon
GCCAGGGTCCTGTGCAGGTGTGGGTGCAGCTGCCTCGTTCTCCTCCTCTCAAGACCTACCTGATGATGTCCTGCTCTTCATCAAGGCACACCCGCTGCTGGATCCTGCTGTGCCACCCGCCACCCATCAACCGCTCCTCACTCTGACTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777-'23-18,'23-17,24-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.289 C2=0.058
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.3=100)
A:
PF0140314=Sema=FE(10.6=100)
C2:
PF0140314=Sema=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGATCGCCACTGGACATC
R:
GGTGTGCCTTGATGAAGAGCA
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: