GgaEX1051714 @ galGal4
Exon Skipping
Gene
ENSGALG00000027651 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr25:1780461-1781505:-
Coord C1 exon
chr25:1781288-1781505
Coord A exon
chr25:1780857-1780988
Coord C2 exon
chr25:1780461-1780616
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTGCCACGCGTCACCCACAGCAT
3' ss Score
6.28
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GTGCCGGTGTCCCGCGTGGGCCGCGTGTGCCGCAATGACGCCGGGGGGTCCCCGCGGGTCCTGGAGCGGCGCTGGACGTCGTTCCTGAAGAAGCGGCTGCAGTGCGCCGTGCCCGGGGACGTCCCCTTCCACTTCGATGTCCTCGAGGCCGTCACTGCGCCCCACACACTGCACGGGCAGCCCGCGGTGCTGGCGGTGTTTGGGACGCAGCGCAACAG
Seq A exon
CATCCCGGGCTCGGCTGTGTGCGCCTTCTACCTGGCGGACGTGGAACGCGCCTTCGAGGGACCCTTTGCTGACCCCCGCGGTGCCGCGGCCCCATGGCCCCCAGTGCCCGAGGAGCGCGTGCCCCGGCCCAG
Seq C2 exon
ACCCGGCTGCTGTGCGGGGATGGGGTCGGCCGCTGCCATTGTCACCTCTGGGGACATCCCCGACGAGACGCTGTCCTTCGCCAAGGAGCACCCCCTGCTGCACGGGGCGGTGGCGCCCGCCGGGGGACGGCCGCTCTTCACCCAAACCGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027651_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.467 C2=0.113
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.4=100)
A:
PF0140314=Sema=FE(10.7=100)
C2:
PF0140314=Sema=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTTCCACTTCGATGTCC
R:
GTGCCGGTTTGGGTGAAGAG
Band lengths:
250-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]