BtaEX0031901 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007281 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr3:19723609-19724644:+
Coord C1 exon
chr3:19723609-19723826
Coord A exon
chr3:19724096-19724227
Coord C2 exon
chr3:19724492-19724644
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCGTTCTCTGGCTCCCTCAGCAT
3' ss Score
6.38
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGCAGTTCTCTCGTGTGGCCCGTGTGTGTAAGCGCGACATGGGTGGCTCACCTAGGGCCTTGGACCGCCACTGGACATCCTTCCTGAAGCTGCGGCTCAACTGCTCTGTCCCTGGAGACTCGACCTTCTATTTTGATGTCTTACAGGCCTTGACAGGGCCTGTGAACTTGTATGGTCGCTCTGCTCTCTTTGGGGTCTTCACCACCCAGACCAATAG
Seq A exon
CATTCCTGGCTCTGCGGTCTGCGCCTTCTACCTGGATGATATCGAGCGTGGGTTTGAGGGCAAGTTCAAGGAGCAGAGGAGTCTGGATGGGGCCTGGACCCCTGTGTCTGAGGACAGGGTCCCCTCCCCCAG
Seq C2 exon
GCCCGGATCCTGTGCAGGAGTAGGTGTGGCTGCATTGTTCCCCTCTTCCCGAGATCTCCCTGATGATGTCCTGACCTTCATCAAGGCTCACCCACTCCTGGACCCTGCCGTGCCACCTGCCACCCATCAGCCTCTGCTCACCCTCACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007281_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.244 C2=0.019
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.0=100)
A:
PF0140314=Sema=FE(10.4=100)
C2:
PF0140314=Sema=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATCCTTCCTGAAGCTGC
R:
GGAGTGGGTGAGCCTTGATGA
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development