HsaEX0057168 @ hg38
Exon Skipping
Gene
ENSG00000143434 | SEMA6C
Description
semaphorin 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr1:151137711-151138406:-
Coord C1 exon
chr1:151138316-151138406
Coord A exon
chr1:151137986-151138105
Coord C2 exon
chr1:151137711-151137799
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACTCCACCCATCCCTCCAGAGG
3' ss Score
6.7
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
ATAACTTCGCTGCAGCAGGAGGGTGAGGAACTGAGTGGGCAGGCTCGATGCCCCTTTGATGCCACCCAGTCCAACGTGGCCATCTTTGCAG
Seq A exon
AGGGCAGCCTGTACTCAGCCACAGCTGCGGATTTCCAGGCCAGTGATGCTGTAGTTTACAGAAGCCTTGGGCCCCAGCCCCCACTCCGCTCCGCCAAGTATGACTCCAAGTGGCTCCGAG
Seq C2 exon
AGCCACACTTTGTCCAGGCCTTGGAGCATGGAGACCATGTCTACTTCTTCTTCCGCGAGGTCTCTGTGGAGGATGCTCGGCTGGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143434_MULTIEX3-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(25.0=100),PF0140314=Sema=PU(1.1=9.7)
A:
PF0140314=Sema=FE(12.1=100)
C2:
PF0140314=Sema=PD(0.1=0.0),PF0140314=Sema=FE(10.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACTTCGCTGCAGCAGGAG
R:
CTCCCCAGCCGAGCATCC
Band lengths:
179-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development