MmuEX6072505 @ mm9
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:94972221-94972819:+
Coord C1 exon
chr3:94972221-94972311
Coord A exon
chr3:94972509-94972628
Coord C2 exon
chr3:94972731-94972819
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACTCCCCTCATCTCTCCAGAGG
3' ss Score
7.4
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATAACATCTCTGCAACAGGAGGGTGAGGAGCTGAGTGGGCAGGCTCGATGCCCCTTTGATGCCACCCAGTCCACTGTGGCCATCTTTGCAG
Seq A exon
AGGGCAGTTTGTACTCAGCCACAGCAGCAGATTTCCAGGCCAGTGATGCTGTAGTTTACAGAAGTCTTGGACCTCAGCCTCCACTCCGTTCTGCAAAGTATGACTCCAAGTGGCTTCGAG
Seq C2 exon
AGCCACACTTTGTCTATGCGTTGGAGCATGGAGAGCACGTCTACTTCTTCTTCCGAGAAGTCTCTGTGGAGGATGCCCGCTTAGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777-'19-14,'19-13,21-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(23.6=100),PF0140314=Sema=PU(1.1=9.7)
A:
PF0140314=Sema=FE(12.0=100)
C2:
PF0140314=Sema=PD(5.5=23.3),PF0140314=Sema=FE(11.1=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTCTGCAACAGGAGGGT
R:
CTAAGCGGGCATCCTCCACAG
Band lengths:
172-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: