RnoEX0079397 @ rn6
Exon Skipping
Gene
ENSRNOG00000021101 | Sema6c
Description
semaphorin 6C [Source:RGD Symbol;Acc:3659]
Coordinates
chr2:196338637-196339242:+
Coord C1 exon
chr2:196338637-196338727
Coord A exon
chr2:196338928-196339047
Coord C2 exon
chr2:196339154-196339242
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCACTCCCTCGTCTCTCCAGAGG
3' ss Score
9.16
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATAACATCTCTGCAACAGGAGGGTGAGGAGCTGAGTGGGCAAGCTCGATGCCCCTTTGATGCCACCCAGTCCACTGTGGCCATCTCTGCAG
Seq A exon
AGGGTAGTTTGTACTCAGCCACAGCAGCAGATTTCCAGGCCAGTGATGCTGTGGTTTACAGAAGCCTTGGACCTCAGCCCCCACTCCGTTCTGCAAAGTATGACTCCAAGTGGCTTCGAG
Seq C2 exon
AGCCACACTTTGTCTATGCTTTGGAGCATGGAGACCATGTCTACTTCTTCTTCCGAGAAGTCTCTGTGGAGGACGCCCGCCTGGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021101_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(23.8=100),PF0140314=Sema=PU(1.5=12.9)
A:
PF0140314=Sema=FE(9.6=100)
C2:
PF0140314=Sema=PD(4.8=20.0),PF0140314=Sema=FE(11.1=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACATCTCTGCAACAGGAGGG
R:
CGGGCGTCCTCCACAGAG
Band lengths:
170-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]