GgaEX7011787 @ galGal4
Exon Skipping
Gene
ENSGALG00000027651 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr25:1781752-1782230:-
Coord C1 exon
chr25:1782140-1782230
Coord A exon
chr25:1781917-1782033
Coord C2 exon
chr25:1781752-1781840
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCGACTCACTGTCCCCGCAGACG
3' ss Score
10.83
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
Exon sequences
Seq C1 exon
GCGCTGACCCTACAGCAGGAGGGCGAGGAGCTGCCCGGACAGGCGCGCTGCCCCTTTGATGCACGGCAGAGCATTGCAGCCACTTTTGCTG
Seq A exon
ACGACCGTCTGTACTCCGCCACCGTGGCCGACTTCCAGGCGAGCGACGCCGTCATCTACCGCAGTGTGCGCGGCCCGGCGCTGCGCAGCATCAAGTACAGCTCCCGCTGGCTGCGGG
Seq C2 exon
AGCCGCACTTCGTCCACGCGATGCCCCACGGAGCGCACGTCTACTTCTTCTTCCGGGAGATGGCGGCGGAGCTGGGGCTGCCGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027651-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.3=100)
A:
PF0140314=Sema=FE(9.4=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCAGGAGGGCGAGG
R:
GCCATCTCCCGGAAGAAGAAG
Band lengths:
146-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]