BtaEX0031900 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007281 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr3:19722640-19723316:+
Coord C1 exon
chr3:19722640-19722730
Coord A exon
chr3:19722929-19723048
Coord C2 exon
chr3:19723228-19723316
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACCCTACCCACCCCTCCAGAGG
3' ss Score
6.95
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
ATAACTTCGCTGCAGCAGGAGGGTGAGGAGCTGAGTGGGCAAGCTCGATGCCCCTTTGATGCCACCCAGTCCAACGTGGCCGTGTTTGCAG
Seq A exon
AGGGCAGCCTGTACTCAGCCACAGCTGCAGACTTCCAGGCCAGTGATGCTGTGGTTTACCGAAGCCTTGGGCCTCAGCCCCCGCTCCGCTCCGCCAAGTACGACTCCAAGTGGCTCCGAG
Seq C2 exon
AGCCACACTTTGTCCACGCTTTGGAGCACGGAGACCATGTCTACTTCTTCTTCCGAGAAGTCTCTGTGGAGGATGCCCGGCTGGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007281-'12-12,'12-11,16-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.1=100)
A:
PF0140314=Sema=FE(9.4=100)
C2:
PF0140314=Sema=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACTTCGCTGCAGCAGGAG
R:
CGGGCATCCTCCACAGAGA
Band lengths:
170-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development