MmuEX6072505 @ mm10
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:95168299-95168897:+
Coord C1 exon
chr3:95168299-95168389
Coord A exon
chr3:95168587-95168706
Coord C2 exon
chr3:95168809-95168897
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACTCCCCTCATCTCTCCAGAGG
3' ss Score
7.4
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATAACATCTCTGCAACAGGAGGGTGAGGAGCTGAGTGGGCAGGCTCGATGCCCCTTTGATGCCACCCAGTCCACTGTGGCCATCTTTGCAG
Seq A exon
AGGGCAGTTTGTACTCAGCCACAGCAGCAGATTTCCAGGCCAGTGATGCTGTAGTTTACAGAAGTCTTGGACCTCAGCCTCCACTCCGTTCTGCAAAGTATGACTCCAAGTGGCTTCGAG
Seq C2 exon
AGCCACACTTTGTCTATGCGTTGGAGCATGGAGAGCACGTCTACTTCTTCTTCCGAGAAGTCTCTGTGGAGGATGCCCGCTTAGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(23.6=100),PF0140314=Sema=PU(1.1=9.7)
A:
PF0140314=Sema=FE(9.6=100)
C2:
PF0140314=Sema=PD(5.5=23.3),PF0140314=Sema=FE(11.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTCTGCAACAGGAGGGT
R:
CTAAGCGGGCATCCTCCACAG
Band lengths:
172-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types