HsaEX0057164 @ hg38
Exon Skipping
Gene
ENSG00000143434 | SEMA6C
Description
semaphorin 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr1:151135163-151136163:-
Coord C1 exon
chr1:151136011-151136163
Coord A exon
chr1:151135591-151135764
Coord C2 exon
chr1:151135163-151135309
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTGAGGCCCTTTCCTCCAGGGC
3' ss Score
6.99
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCCAGGATCCTGTGCAGGAGTAGGGGGAGCTGCCTTGTTCTCCTCTTCCCGAGACCTCCCTGATGATGTCCTGACCTTCATCAAGGCTCACCCGCTGCTGGACCCCGCTGTACCACCTGTCACCCATCAGCCTCTACTCACTCTCACTAGCAG
Seq A exon
GGCCCTACTGACCCAAGTAGCTGTGGATGGCATGGCTGGTCCCCACAGTAACATCACAGTCATGTTCCTTGGCTCCAATGATGGGACAGTGCTGAAGGTGCTGACCCCAGGTGGGCGATCCGGGGGACCTGAGCCCATCCTCCTGGAAGAGATTGATGCCTACAGCCCTGCCCG
Seq C2 exon
GTGCAGTGGGAAGCGGACAGCCCAAACAGCACGACGGATCATAGGGCTGGAGCTGGACACTGAGGGTCACAGGCTTTTTGTGGCTTTTTCTGGCTGTATTGTCTACCTCCCTCTCAGCCGGTGTGCCCGGCATGGGGCCTGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143434-'35-31,'35-29,36-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.105 C2=0.057
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.1=100)
A:
PF0140314=Sema=FE(13.7=100)
C2:
PF0140314=Sema=PD(1.9=16.0),PF0143720=PSI=PU(14.5=18.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTTGTTCTCCTCTTCC
R:
GGCTGAGAGGGAGGTAGACAA
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development