MmuEX6072500 @ mm10
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:95169988-95170897:+
Coord C1 exon
chr3:95169988-95170140
Coord A exon
chr3:95170318-95170491
Coord C2 exon
chr3:95170751-95170897
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTGAAGCCTGTCGCTCCAGGGC
3' ss Score
2.97
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCCAGGGTCCTGTGCAGGTGTGGGTGCAGCTGCCTCGTTCTCCTCCTCTCAAGACCTACCTGATGATGTCCTGCTCTTCATCAAGGCACACCCGCTGCTGGATCCTGCTGTGCCACCCGCCACCCATCAACCGCTCCTCACTCTGACTAGCAG
Seq A exon
GGCCCTGCTGACCCAGGTAGCTGTGGACGGAATGGCTGGTCCCCACAGAAATACTACTGTCCTGTTTCTTGGCTCCAACGATGGGACAGTGCTGAAGGTGCTACCTCCAGGGGGTCAGTCTTTGGGCTCTGAGCCTATCGTCTTGGAAGAGATTGATGCCTACAGCCATGCCCG
Seq C2 exon
GTGCAGTGGGAAGCGGTCACCCCGAGCTGCGCGGCGGATCATAGGGCTGGAGCTGGACACTGAGGGTCACAGGCTTTTTGTGGCCTTTCCTGGATGTATCGTCTACCTCTCTCTCAGCCGGTGTGCCCGGCATGGAGCATGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777-'33-31,'33-29,34-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=0.034 C2=0.060
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.2=100)
A:
PF0140314=Sema=FE(13.9=100)
C2:
PF0140314=Sema=PD(0.5=4.0),PF0143720=PSI=PU(14.5=18.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGTTCTCCTCCTCTCAA
R:
CCGGCTGAGAGAGAGGTAGAC
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types