DreEX6071231 @ danRer10
Exon Skipping
Gene
ENSDARG00000002748 | sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:ZFIN;Acc:ZDB-GENE-040426-1933]
Coordinates
chr19:412433-413194:+
Coord C1 exon
chr19:412433-412583
Coord A exon
chr19:412802-412975
Coord C2 exon
chr19:413066-413194
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTGTGCAGTTA
3' ss Score
8.19
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GTTCGTGTGCAGGTGAGGGTTCTGCCTCCTCCTATTCCTCTTCTGTTCAGTTTCCAGACTCTGTGCTGTCGTTCATCAAAACACACCCGCTGATGGAGGAGAGCGTGCCGTCAGTCAACAGCCAACCGCTGATCACCAACACCGCCAGCAG
Seq A exon
TTATAAGCTGACTCAGATTGTGGTGGACACTGCTGCTGGGCCTCATAAGAACCGCACCGTAGTGTTTCTGGGCTCTGAAGACGGACGCGTGCTGAAGATCCTGACCAACACACACACCAACAGCTCACACACATCCCAGCTGCTGGAGGACATCGACGTGTTTAATCCTACACG
Seq C2 exon
GTGTGTTGGTGAGCGTGCAGTGTTGGGTCTGGAGCTGGATAAGGAGCATCACGCTCTGTTTGTGGCCTTCTCCAGCTGTGTGATCAGAGTTCCTCTCAGCCGCTGCGCTCAGCACGCCACCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002748-'14-15,'14-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(1.3=66.7)
A:
PF0140314=Sema=FE(13.6=100)
C2:
PF0140314=Sema=PD(1.9=18.2),PF0143720=PSI=PU(16.4=20.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGTGTGCAGGTGAGGGTTC
R:
GGAACTCTGATCACACAGCTGG
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]