BtaEX6015093 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007281 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr3:19724492-19725464:+
Coord C1 exon
chr3:19724492-19724644
Coord A exon
chr3:19724875-19725048
Coord C2 exon
chr3:19725318-19725464
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCCGAGGCCTATTCCTCCAGGGC
3' ss Score
4.85
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCCCGGATCCTGTGCAGGAGTAGGTGTGGCTGCATTGTTCCCCTCTTCCCGAGATCTCCCTGATGATGTCCTGACCTTCATCAAGGCTCACCCACTCCTGGACCCTGCCGTGCCACCTGCCACCCATCAGCCTCTGCTCACCCTCACCAGCAG
Seq A exon
GGCCCTACTGACCCAGGTGGCTGTGGATGGCATGGCTGGTCCCTACAGTAACATCACAGTCCTGTTCCTTGGCTCCAATGATGGGACAGTGCTGAAGGTGCTGCCCCCAGGGGGGCAATCTGGGGGCTCTGAGCCCATTCTGTTGGAAGAGATCGATGCCTACAGCCCCTCCCG
Seq C2 exon
GTGCAGTGGGAAGCGGGCAGCCCAAACAGCACGGCGGGTCATAGGGCTGGAGCTGGACACTGAAGGTCACAGGCTCTTTGTGGCTTTTTCTGGCTGCATCATCTACCTCCCTCTTAGTCGGTGTGCCCAGCATGGGGCCTGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007281-'21-20,'21-18,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.102 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.0=100)
A:
PF0140314=Sema=FE(13.7=100)
C2:
PF0140314=Sema=PD(2.1=18.0),PF0143720=PSI=PU(14.5=18.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCCCTCTTCCCGAGATC
R:
CACACCGACTAAGAGGGAGGT
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]