MmuEX1023274 @ mm10
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:95170751-95171389:+
Coord C1 exon
chr3:95170751-95170897
Coord A exon
chr3:95171173-95171250
Coord C2 exon
chr3:95171334-95171389
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACAGCTCAGTTTCCCCTAGGAG
3' ss Score
2.63
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTGCAGTGGGAAGCGGTCACCCCGAGCTGCGCGGCGGATCATAGGGCTGGAGCTGGACACTGAGGGTCACAGGCTTTTTGTGGCCTTTCCTGGATGTATCGTCTACCTCTCTCTCAGCCGGTGTGCCCGGCATGGAGCATGTCAGAG
Seq A exon
GAGCTGCCTGGCTTCTCTGGACCCATACTGTGGATGGCATCGATCCAGAGGCTGCATGAGTATCAGGGGACCTGGTGG
Seq C2 exon
GACTGATGTCGATCTGACTGGGAACCAGGAATCCACAGAGCACGGTGACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777-'35-37,'35-35,38-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.089 C2=0.940
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(0.5=4.0),PF0143720=PSI=PU(14.5=18.0)
A:
PF0143720=PSI=FE(41.9=100)
C2:
PF0143720=PSI=FE(30.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATAGGGCTGGAGCTGGA
R:
CTTGGCAGTCACCGTGCTC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types