HsaEX0057165 @ hg38
Exon Skipping
Gene
ENSG00000143434 | SEMA6C
Description
semaphorin 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr1:151134620-151135309:-
Coord C1 exon
chr1:151135163-151135309
Coord A exon
chr1:151134798-151134875
Coord C2 exon
chr1:151134620-151134675
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACACCTCCGTTTTCCCTAGGAG
3' ss Score
10.61
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTGCAGTGGGAAGCGGACAGCCCAAACAGCACGACGGATCATAGGGCTGGAGCTGGACACTGAGGGTCACAGGCTTTTTGTGGCTTTTTCTGGCTGTATTGTCTACCTCCCTCTCAGCCGGTGTGCCCGGCATGGGGCCTGTCAGAG
Seq A exon
GAGCTGTTTGGCTTCTCAGGACCCATACTGTGGATGGCATAGCTCCAGGGGCTGTGTGGATATCAGGGGATCTGGTGG
Seq C2 exon
GACTGATGTGGATCAGGCTGGGAACCAGGAATCCATGGAGCATGGTGACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143434-'37-36,'37-34,39-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.081 C2=0.970
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(1.9=16.0),PF0143720=PSI=PU(14.5=18.0)
A:
PF0143720=PSI=FE(41.9=100)
C2:
PF0143720=PSI=FE(30.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACAGCACGACGGATCAT
R:
GCTCCATGGATTCCTGGTTCC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development