BtaEX6015092 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007281 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr3:19725318-19725997:+
Coord C1 exon
chr3:19725318-19725464
Coord A exon
chr3:19725738-19725815
Coord C2 exon
chr3:19725942-19725997
Length
78 bp
Sequences
Splice sites
3' ss Seq
TATGACTCAGTTTTCCCTAGGAG
3' ss Score
4.34
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTGCAGTGGGAAGCGGGCAGCCCAAACAGCACGGCGGGTCATAGGGCTGGAGCTGGACACTGAAGGTCACAGGCTCTTTGTGGCTTTTTCTGGCTGCATCATCTACCTCCCTCTTAGTCGGTGTGCCCAGCATGGGGCCTGTCGGAG
Seq A exon
GAGCTGTCTGGCTTCTCAGGACCCATACTGTGGATGGGACAGCTCCAGAGGCTGCGTGGATATCAGGGCACCTGGTGG
Seq C2 exon
GATTGATGTGGATCCAACTGGTAACCAGGAATCCATGGAGCATGATGACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007281-'23-24,'23-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.148 C2=1.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(2.1=18.0),PF0143720=PSI=PU(14.5=18.0)
A:
PF0143720=PSI=FE(41.9=100)
C2:
PF0143720=PSI=FE(30.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATAGGGCTGGAGCTGG
R:
CTTGGCAGTCATCATGCTCCA
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]