GgaEX7011791 @ galGal4
Exon Skipping
Gene
ENSGALG00000027651 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr25:1779388-1779850:-
Coord C1 exon
chr25:1779713-1779850
Coord A exon
chr25:1779568-1779645
Coord C2 exon
chr25:1779388-1779443
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGAGCACTGACCCCACACAGGAG
3' ss Score
3.13
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGCCGGGGGCCGCGCGGTGCCAGCCGGGTGTTGGGGTTGGAGCTGCACCCCGAAGGCCGGGAGCTCTTCGTCGCCTTCTCGGGGTGCATCGTGCGACTGCCCCTGAGCCGCTGCGCCCGGCACGGGCAGTGCCGCCG
Seq A exon
GAGCTGCCTGGCAGCGCGGGACCCCTACTGCGTCTGGCTGCCCCCCGGGGGCTGCGTCCCCTTCTCTGAGGACCTCCC
Seq C2 exon
GGACGGCTTTGAGCAGGACGTGGAGGGGTCCAGCGGGCTGACGGGGACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027651-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.550
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(0.2=2.1),PF0143720=PSI=PU(15.3=19.1)
A:
PF0143720=PSI=FE(44.1=100)
C2:
PF0143720=PSI=FE(32.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTGGGGTTGGAGCTG
R:
CTGCACAGGTCCCCGTCAG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]