DreEX6041417 @ danRer10
Exon Skipping
Gene
ENSDARG00000000189 | sema6e
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E [Source:ZFIN;Acc:ZDB-GENE-040724-119]
Coordinates
chr16:30291396-30317399:+
Coord C1 exon
chr16:30291396-30291533
Coord A exon
chr16:30296865-30296942
Coord C2 exon
chr16:30317341-30317399
Length
78 bp
Sequences
Splice sites
3' ss Seq
TATGTGTGTGTGTTTTTTAGGAG
3' ss Score
11.53
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ATGTAATGTGCGTGGGGAGGACCGGAGGATTCTGGGATTGGAGCTGGATAAAGACCATCATGCCCTGTTTGTGGCCTTTACAGGTTGCGTAATCCGTGTTCCACTCAGTCGCTGTTCGGATTATGGAATCTGCAGAAA
Seq A exon
GAGCTGCCTGTCCTCACGAGACCCCTATTGCATCTGGCTGAGCGCAGGGAACTGTGCCACGGTGGCGCCGGGATTCAA
Seq C2 exon
GTCTGGATTCGAGCAGTATGTAGAGAGTGGATATCCTCAGTATCCAGACAGCTGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000189-'14-20,'14-18,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(1.2=10.6),PF0143720=PSI=PU(13.8=19.1)
A:
PF0143720=PSI=FE(40.0=100)
C2:
PF0143720=PSI=FE(30.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCTGGGATTGGAGCTGG
R:
CGTGACAGCTGTCTGGATACTG
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]