DreEX6073052 @ danRer10
Exon Skipping
Gene
ENSDARG00000062352 | sema4ab
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
Coordinates
chr19:24796723-24798003:+
Coord C1 exon
chr19:24796723-24796904
Coord A exon
chr19:24797018-24797162
Coord C2 exon
chr19:24797814-24798003
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTTGTTTTTAGGCG
3' ss Score
10.77
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGTGATGTTGGTGGGCAGAGAACTTTACAGAAACGCTGGACCACCTTTGCCAAGGCTCAGCTATTGTGTCAAGCTGACCAAGAGCTGCCATACAACGTTCTGCAGGACGTTATCAGCCTTTCTCCACCAGAGGGCGCATCTGAGGATGAAACACTCTTCTATGGGATTTTCACTTCTCAGTG
Seq A exon
GCGAGTAAACTTGGGTCGCTCAGCCGTGTGTGCTTTCAGCCTCAAAGACATTAAAAAGGTGTTTACAGGACGTTATAAGGTTCTGAATCGGGATACTCTGAAATGGAGCACAAGGGTGCAGGAGCAGATGGCAAACCCTGGAGAG
Seq C2 exon
TGTGGACTGCACAATGCTTCAGACAACACTCTGCGCTTTGTTAAGGACAATTTCCTGGCTGATAAAAGTGTTCTACCAGTCAATCAGGGCCTGACAGTGGTGTCACCTGATAAGAGCTACAGCAACATCGCAGCTCAGAGAGTACAAGGAGCACGCGGCAAATATTACACTGTGCTTTATCTGCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062352-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.023
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(14.3=100)
A:
PF0140314=Sema=FE(11.5=100)
C2:
PF0140314=Sema=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGCTGCCATACAACGT
R:
TGAGCTGCGATGTTGCTGTAG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]