DreEX6073786 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36800350-36814167:-
Coord C1 exon
chr19:36814046-36814167
Coord A exon
chr19:36802530-36802633
Coord C2 exon
chr19:36800350-36800462
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGATTGGTCCCTGTGTGTAGGTG
3' ss Score
8.19
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
CTCCCATGTGTGGTGGTCAGCTCCGTGGCCCGAGTGGGATCATCACCTCCCCAAACTTTCCAGTACAATATGACAACAATGCAAACTGTACCTGGATCATCACCGCTTCAGACTCCTCCAAG
Seq A exon
GTGATCAAGCTGACATTCGAGGAGTTTGACCTGGAGCGAGGCTACGACACGCTAACTGTTGGAGACGGCTCTGTAATCGGCGATCAGCGGACGGTCTTTCATGT
Seq C2 exon
GCTGTCTGGGACTACGACTCCGGATCTGGTGGTCAGCACTAGTCATCAGATGTGGCTTAATTTTAAAACGGATGATACAAGTGGCTCCCTGGGCTTTAAGGTTTCTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(33.9=90.2)
A:
PF0043115=CUB=FE(31.2=100)
C2:
PF0043115=CUB=PD(33.0=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCATGTGTGGTGGTCAG
R:
TTCATAAGAAACCTTAAAGCCCAGGG
Band lengths:
234-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]