DreEX6073787 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36791190-36802633:-
Coord C1 exon
chr19:36802530-36802633
Coord A exon
chr19:36800350-36800462
Coord C2 exon
chr19:36791190-36791372
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGTCTTATTTCAATGTTTAGGCT
3' ss Score
7.47
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTGATCAAGCTGACATTCGAGGAGTTTGACCTGGAGCGAGGCTACGACACGCTAACTGTTGGAGACGGCTCTGTAATCGGCGATCAGCGGACGGTCTTTCATGT
Seq A exon
GCTGTCTGGGACTACGACTCCGGATCTGGTGGTCAGCACTAGTCATCAGATGTGGCTTAATTTTAAAACGGATGATACAAGTGGCTCCCTGGGCTTTAAGGTTTCTTATGAAG
Seq C2 exon
AAATTGACCAGGGCGGCTGCGGAGACCCTGGAATCCCAGCCTACGGCAAGAGGGAAGGCACAGGCTTCCGACACGGAGACAAGCTATATTTTGAGTGTCTTCCAGCCTTTGAGCTTGTTGGAAAAAAGAACATTACCTGCCAGAAAAATAATCAGTGGTCGGCCAAGAAGCCAAGCTGCGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(31.2=100)
A:
PF0043115=CUB=PD(33.0=92.3)
C2:
PF0008415=Sushi=WD(100=87.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTACGACACGCTAACTG
R:
ACACGCAGCTTGGCTTCTTG
Band lengths:
250-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]