DreEX6073788 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36787172-36800462:-
Coord C1 exon
chr19:36800350-36800462
Coord A exon
chr19:36791190-36791372
Coord C2 exon
chr19:36787172-36787498
Length
183 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTGTCTTTTTCAGAAA
3' ss Score
12.67
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GCTGTCTGGGACTACGACTCCGGATCTGGTGGTCAGCACTAGTCATCAGATGTGGCTTAATTTTAAAACGGATGATACAAGTGGCTCCCTGGGCTTTAAGGTTTCTTATGAAG
Seq A exon
AAATTGACCAGGGCGGCTGCGGAGACCCTGGAATCCCAGCCTACGGCAAGAGGGAAGGCACAGGCTTCCGACACGGAGACAAGCTATATTTTGAGTGTCTTCCAGCCTTTGAGCTTGTTGGAAAAAAGAACATTACCTGCCAGAAAAATAATCAGTGGTCGGCCAAGAAGCCAAGCTGCGTGT
Seq C2 exon
TTTCATGTTTCTTCAACTTCACGACTCCGTCTGGGGTTCTGCTATCACCAAACTACCCTCAAGAGTACGGCAACAACATGCACTGCGTGTGGCTGATCATCGCCAAACCAGAGAGCAGAATCAACCTGGCCTTCAATGACCTGAGCATGGAGAAACAGTTTGACTTCTTGTCCATTAAAGATGGCGGAAAAGCAGAGTCGCCTATTTTGGGCACCTTTTCTGGAGACGTGCTGCCATCACCCATTACTACCAGCGGTCACGTGGCACGATTGGAGTTTTTGACGGACCACACATACACAGATCGGGGATTCAACATCACTTTCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(33.0=92.3)
A:
PF0008415=Sushi=WD(100=87.1)
C2:
PF0043115=CUB=WD(100=96.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACGACTCCGGATCTGGTG
R:
GCTCAGGTCATTGAAGGCCAG
Band lengths:
249-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]