DreEX6075787 @ danRer10
Exon Skipping
Gene
ENSDARG00000104200 | si:ch211-285j16.4
Description
si:ch211-285j16.4 [Source:ZFIN;Acc:ZDB-GENE-141219-32]
Coordinates
chr15:17967747-17969608:+
Coord C1 exon
chr15:17967747-17967798
Coord A exon
chr15:17968486-17968569
Coord C2 exon
chr15:17969432-17969608
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTTATCTCTGTTTCATTAGACC
3' ss Score
6.88
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTGGAGGGAACTAAACAGTCAGTCACTCAGAATGAGCTCATCTGCTTAACTG
Seq A exon
ACCGTCCATACAACACATCCATCACCCTTGCTCTTCCTAAAGTTTTTGTGAAGGATTCTGCCAAATGCTTCATCACTGTTCTGG
Seq C2 exon
GAGATCTGATGGGTCGTGCTTTGAGAAACATTGGTGATCTTCTGGCTATGCCATACGGCTGTGGAGAGCAGAACATGCTGCAGTTTGCCCCAAATATTTACATCCTTCAATACCTGGAGAGCAGCGGACAGCTCACTCCTGAGATCAGAGCCCGAGCCGTAACCTTCCTACAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104200-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGGAACTAAACAGTCAGT
R:
CGCTGCTCTCCAGGTATTGAA
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]