DreEX6075788 @ danRer10
Exon Skipping
Gene
ENSDARG00000104200 | si:ch211-285j16.4
Description
si:ch211-285j16.4 [Source:ZFIN;Acc:ZDB-GENE-141219-32]
Coordinates
chr15:17967432-17968569:+
Coord C1 exon
chr15:17967432-17967553
Coord A exon
chr15:17967747-17967798
Coord C2 exon
chr15:17968486-17968569
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTGTTATCCATTTATCTCAGGTG
3' ss Score
8.1
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAAAGGTGAACTTTACAGTGCGTGCCGAGGCAGTGAAGACCCGAGAACTGTGTGGCAATGAAGTGGTGACTTTGCCAGACAAAGGCAAAGTTGATACTGTGATGCAGAGCGTTCTGGTGGAG
Seq A exon
GTGGAGGGAACTAAACAGTCAGTCACTCAGAATGAGCTCATCTGCTTAACTG
Seq C2 exon
ACCGTCCATACAACACATCCATCACCCTTGCTCTTCCTAAAGTTTTTGTGAAGGATTCTGCCAAATGCTTCATCACTGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104200-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGTGAAGACCCGAGAA
R:
AGGAAGAGCAAGGGTGATGGA
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]